Hierarchy For All Packages

Package Hierarchies:

edu.iastate.anthill.indus, edu.iastate.anthill.indus.agent, edu.iastate.anthill.indus.datasource, edu.iastate.anthill.indus.datasource.mapping, edu.iastate.anthill.indus.datasource.schema, edu.iastate.anthill.indus.datasource.type, edu.iastate.anthill.indus.datasource.view, edu.iastate.anthill.indus.iterator, edu.iastate.anthill.indus.iterator.ec, edu.iastate.anthill.indus.iterator.go, edu.iastate.anthill.indus.iterator.mapping, edu.iastate.anthill.indus.iterator.mips, edu.iastate.anthill.indus.iterator.pdb, edu.iastate.anthill.indus.iterator.scop, edu.iastate.anthill.indus.iterator.swissprot, edu.iastate.anthill.indus.panel, edu.iastate.anthill.indus.panel.query, edu.iastate.anthill.indus.query, edu.iastate.anthill.indus.reasoner, edu.iastate.anthill.shared, edu.iastate.utils, edu.iastate.utils.gui, edu.iastate.utils.io, edu.iastate.utils.lang, edu.iastate.utils.log, edu.iastate.utils.net, edu.iastate.utils.net.ftp, edu.iastate.utils.sql, edu.iastate.utils.string

Class Hierarchy

• class java.lang.Object
  • class javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • class javax.swing.DefaultCellEditor (implements javax.swing.table.TableCellEditor, javax.swing.tree.TreeCellEditor)
      • class edu.iastate.utils.gui.MyComboBoxEditor
  • class edu.iastate.anthill.indus.query.ARFFParser
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.AddFromTemplateAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.AddSetFromTemplateAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.CreateSubvalueAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.DeleteAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.DeleteAllChildrenAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.DeleteButKeepChildrenAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.EditCommentsAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHEditor.RenameAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.datasource.type.AVHTest
  • class edu.iastate.utils.log.BeanInfoEx (implements java.beans.BeanInfo)
  • class edu.iastate.utils.log.BeanUtils
  • class edu.iastate.anthill.indus.datasource.mapping.BridgeRule (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.utils.net.Browser.LinkFollower (implements javax.swing.event.HyperlinkListener)
  • class edu.iastate.utils.net.CGIFields
  • class edu.iastate.utils.net.CGIWrapper
  • class edu.iastate.utils.string.ChineseUtils
  • class edu.iastate.anthill.indus.reasoner.CompClass
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class javax.swing.JComponent (implements java.io.Serializable)
        • class javax.swing.JComboBox (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • class edu.iastate.utils.gui.MyComboBoxRenderer (implements javax.swing.table.TableCellRenderer)
        • class javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • class javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer, java.io.Serializable)
            • class edu.iastate.anthill.indus.panel.MappingPanelGUI.ConnectorListCellRenderer
            • class edu.iastate.anthill.indus.reasoner.ReasonerPanelGUI.CCListCellRenderer
            • class edu.iastate.anthill.indus.reasoner.ReasonerPanelGUI.RuleListCellRenderer
            • class edu.iastate.anthill.indus.panel.TypePanelGUI.TypeListCellRenderer
          • class edu.iastate.anthill.shared.TypedTreeRender (implements javax.swing.tree.TreeCellRenderer)
        • class javax.swing.JPanel (implements javax.accessibility.Accessible)
          • class edu.iastate.anthill.shared.AboutBoxDialog.AboutPanel
          • class edu.iastate.anthill.shared.AboutBoxDialog.SystemPanel
          • class edu.iastate.anthill.indus.panel.query.ButtonPanel (implements java.awt.event.ActionListener)
          • class edu.iastate.anthill.indus.panel.DataARFFPanel (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.anthill.indus.panel.DataRDBMSPanel (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.utils.sql.DBPanel
          • class edu.iastate.anthill.indus.datasource.type.GraphEditor (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
          • class edu.iastate.anthill.indus.IndusBasis
            • class edu.iastate.anthill.indus.IndusGUI
              • class edu.iastate.anthill.indus.IndusGUIAction (implements edu.iastate.utils.lang.MessageHandler)
                • class edu.iastate.anthill.indus.IndusMain
          • class edu.iastate.anthill.indus.panel.IndusPane
            • class edu.iastate.anthill.indus.panel.DataPaneGUI
              • class edu.iastate.anthill.indus.panel.DataPane (implements edu.iastate.utils.lang.MessageHandler)
            • class edu.iastate.anthill.indus.panel.MappingPanelGUI
              • class edu.iastate.anthill.indus.panel.MappingPanelAction (implements edu.iastate.utils.lang.MessageHandler)
                • class edu.iastate.anthill.indus.panel.MappingPanel
            • class edu.iastate.anthill.indus.panel.QueryPanelGUI
              • class edu.iastate.anthill.indus.panel.QueryPanel (implements edu.iastate.anthill.indus.panel.query.ISQLBuilder, edu.iastate.utils.lang.MessageHandler)
            • class edu.iastate.anthill.indus.panel.SchemaPanelGUI
              • class edu.iastate.anthill.indus.panel.SchemaPanel (implements edu.iastate.utils.lang.MessageHandler)
            • class edu.iastate.anthill.indus.panel.TypePanelGUI
              • class edu.iastate.anthill.indus.panel.TypePanelAction (implements edu.iastate.utils.lang.MessageHandler)
                • class edu.iastate.anthill.indus.panel.TypePanel
            • class edu.iastate.anthill.indus.panel.ViewPanelGUI
              • class edu.iastate.anthill.indus.panel.ViewPanel (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.utils.gui.LabelledItemPanel
            • class edu.iastate.anthill.shared.AboutBoxDialog.MemoryPanel (implements java.awt.event.ActionListener)
          • class edu.iastate.utils.gui.ProgressBarWin
          • class edu.iastate.anthill.indus.reasoner.ReasonerPanelGUI
            • class edu.iastate.anthill.indus.reasoner.ReasonerPanel (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.anthill.indus.panel.query.SelectFromPaneGUI
            • class edu.iastate.anthill.indus.panel.query.SelectFromPane (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener, edu.iastate.utils.lang.MessageHandler, javax.swing.event.TreeSelectionListener)
          • class edu.iastate.anthill.indus.panel.query.SQLBuilderPane
          • class edu.iastate.utils.sql.SQLPanel (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.utils.gui.StatusBar
          • class edu.iastate.anthill.indus.panel.ViewAtomDateSource
          • class edu.iastate.anthill.indus.panel.query.WhereAtomPane (implements edu.iastate.utils.lang.MessageHandler)
          • class edu.iastate.anthill.indus.panel.query.WhereTreePane (implements edu.iastate.utils.lang.MessageHandler)
        • class javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • class edu.iastate.anthill.indus.datasource.type.GraphEditor.ImageScroller
        • class javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • class edu.iastate.utils.gui.JTreeEx
            • class edu.iastate.anthill.shared.TypedTree
      • class java.awt.Panel (implements javax.accessibility.Accessible)
        • class java.applet.Applet
          • class javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • class edu.iastate.anthill.indus.datasource.DSEditorApplet
        • class edu.iastate.anthill.indus.datasource.type.GraphVisualizer (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.lang.Runnable)
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Dialog
          • class javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class edu.iastate.anthill.shared.AboutBoxDialog
            • class edu.iastate.anthill.indus.datasource.type.AVHDialog
            • class edu.iastate.utils.sql.DBViewer
              • class edu.iastate.anthill.indus.panel.DataAVHViewer
            • class edu.iastate.anthill.indus.panel.MappingRuleDialog
            • class edu.iastate.utils.gui.SetupDlg
            • class edu.iastate.utils.sql.SQLDialog (implements edu.iastate.utils.lang.MessageHandler)
            • class edu.iastate.utils.gui.StandardDialog
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class edu.iastate.utils.net.Browser
            • class edu.iastate.utils.Console
            • class edu.iastate.anthill.indus.panel.query.SQLBuilderPaneTest (implements edu.iastate.anthill.indus.panel.query.ISQLBuilder)
    • class java.awt.Label (implements javax.accessibility.Accessible)
      • class edu.iastate.utils.gui.HyperlinkedLabel (implements java.awt.event.MouseListener)
    • class edu.iastate.anthill.indus.agent.TrayNotifier
      • class edu.iastate.anthill.indus.agent.IndusHttpServer.MyTrayNotifier
  • class edu.iastate.utils.log.Config
    • class edu.iastate.anthill.indus.datasource.type.AVHSerializer
    • class edu.iastate.anthill.indus.IndusConfig
  • class edu.iastate.anthill.indus.datasource.mapping.Connector (implements edu.iastate.anthill.indus.datasource.Configable)
    • class edu.iastate.anthill.indus.datasource.mapping.NumericConnector (implements edu.iastate.anthill.indus.datasource.Configable)
    • class edu.iastate.anthill.indus.datasource.mapping.SimpleConnector (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.anthill.indus.panel.DataPane.MySchemaListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.panel.DataRDBMSPanel.DbTypeListListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.datasource.mapping.DataSourceMapping (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.anthill.indus.datasource.type.DataType (implements edu.iastate.anthill.indus.datasource.Configable)
    • class edu.iastate.anthill.indus.datasource.type.Graph (implements edu.iastate.anthill.indus.datasource.Configable)
      • class edu.iastate.anthill.indus.datasource.type.DAG (implements edu.iastate.anthill.indus.datasource.Configable)
        • class edu.iastate.anthill.indus.datasource.type.AVH (implements edu.iastate.anthill.indus.datasource.Configable)
          • class edu.iastate.anthill.indus.datasource.type.DbAVH
    • class edu.iastate.anthill.indus.datasource.type.SimpleDataType (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.anthill.indus.iterator.DB2Tree
    • class edu.iastate.anthill.indus.iterator.ec.EC2Tree
    • class edu.iastate.anthill.indus.iterator.go.Go2Tree
    • class edu.iastate.anthill.indus.iterator.mips.MIPS2Tree
    • class edu.iastate.anthill.indus.iterator.scop.Scop2Tree
  • class edu.iastate.anthill.indus.iterator.DB2TreeFactory
  • class edu.iastate.utils.sql.DbCache
  • class edu.iastate.utils.sql.DBViewer.MySchemaListener (implements java.awt.event.ItemListener)
  • class edu.iastate.utils.Debug
  • class javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • class edu.iastate.anthill.indus.panel.query.DBTableNode
    • class edu.iastate.anthill.indus.panel.query.TreeColumnNode (implements java.lang.Comparable, edu.iastate.anthill.indus.panel.query.IColumn)
    • class edu.iastate.anthill.shared.TypedNode (implements java.lang.Comparable)
      • class edu.iastate.anthill.indus.datasource.DataSourceNode
        • class edu.iastate.anthill.indus.iterator.DBTreeNode
  • class edu.iastate.anthill.indus.reasoner.DIGExample
  • class edu.iastate.anthill.indus.reasoner.DistributedReasoner
  • class edu.iastate.anthill.indus.datasource.type.Edge
  • class edu.iastate.anthill.indus.reasoner.EqualClass
  • class edu.iastate.anthill.indus.reasoner.EqualClassGraph
  • class javax.swing.filechooser.FileFilter
    • class edu.iastate.utils.gui.FileFilterEx
  • class edu.iastate.utils.io.FileUtils
  • class edu.iastate.utils.net.ftp.FtpUtils
  • class edu.iastate.utils.net.ftp.FtpUtilsTest
  • class edu.iastate.anthill.indus.iterator.go.GOIterator.TagValuePair
  • class edu.iastate.utils.gui.GrahicsEx
  • class edu.iastate.utils.gui.GrahicsEx.Setting
  • class edu.iastate.utils.gui.GUIUtils
  • class edu.iastate.utils.gui.GUIUtils.ColumnSorter (implements java.util.Comparator)
  • class edu.iastate.utils.string.HTMLHandler
  • class edu.iastate.anthill.indus.IndusConstants
  • class edu.iastate.anthill.indus.agent.IndusHttpClient (implements edu.iastate.anthill.indus.agent.IndusCommand)
  • class edu.iastate.anthill.indus.agent.InfoReader (implements edu.iastate.anthill.indus.agent.IndusCommand)
  • class edu.iastate.anthill.indus.agent.InfoWriter (implements edu.iastate.anthill.indus.agent.IndusCommand)
  • class edu.iastate.utils.io.IOUtils
  • class edu.iastate.utils.string.ISOCharConverter
  • class edu.iastate.utils.sql.JDBCUtils
    • class edu.iastate.utils.sql.pgJDBCUtils
  • class edu.iastate.utils.sql.JDBCUtilsTest
  • class edu.iastate.utils.gui.Line
  • class edu.iastate.utils.sql.LocalDBConnection
    • class edu.iastate.anthill.indus.datasource.IndusDataSource (implements edu.iastate.anthill.indus.datasource.Configable)
    • class edu.iastate.anthill.indus.IndusDB
      • class edu.iastate.anthill.indus.iterator.mapping.EC2GO (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.ec.ECIterator
      • class edu.iastate.anthill.indus.iterator.go.GOIterator
      • class edu.iastate.anthill.indus.iterator.mapping.MIPS2GO (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.mips.MIPSIterator
      • class edu.iastate.anthill.indus.iterator.mapping.PDB2GO (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.mapping.PDB2SwissProt (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.pdb.PDBConnection
      • class edu.iastate.anthill.indus.iterator.mapping.Prosite2GO (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.mapping.SCOP2EC (implements edu.iastate.anthill.indus.iterator.mapping.MappingDB)
      • class edu.iastate.anthill.indus.iterator.scop.ScopIterator
      • class edu.iastate.anthill.indus.iterator.swissprot.SwissprotConnection
  • class edu.iastate.utils.log.Logging
  • class edu.iastate.anthill.indus.panel.MappingPanel.DeleteMappingRuleListener (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.panel.MappingPanel.MyMappingListListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.panel.MappingPanel.MyTreeSelectionListener (implements javax.swing.event.TreeSelectionListener)
  • class edu.iastate.anthill.indus.panel.MappingPopupMenuListener.EditDataTypeAction (implements java.awt.event.ActionListener)
  • class edu.iastate.anthill.indus.panel.MappingPopupMenuListener.EditSchemaAction (implements java.awt.event.ActionListener)
  • class edu.iastate.utils.lang.MessageMap
  • class java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • class edu.iastate.anthill.shared.TypedTreePopupMenuListener
      • class edu.iastate.anthill.indus.datasource.type.AVHEditor
      • class edu.iastate.anthill.indus.panel.MappingPopupMenuListener
  • class edu.iastate.utils.gui.MyPoint
  • class edu.iastate.anthill.shared.Name (implements java.lang.Comparable)
  • class edu.iastate.anthill.indus.datasource.type.Node
  • class edu.iastate.anthill.shared.Ontology
    • class edu.iastate.anthill.shared.Hierarchy
  • class edu.iastate.anthill.indus.datasource.mapping.OntologyMapping (implements edu.iastate.anthill.indus.datasource.Configable)
    • class edu.iastate.anthill.indus.datasource.mapping.SchemaMapping (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.utils.ParseDate
  • class edu.iastate.utils.string.PatternEx
    • class edu.iastate.utils.string.ParserUtils
      • class edu.iastate.utils.string.SimpleXMLParser
  • class edu.iastate.anthill.indus.iterator.pdb.PDBParser
  • class edu.iastate.anthill.indus.iterator.pdb.PDBSearchFields
  • class edu.iastate.utils.PrintCommandListener (implements org.apache.commons.net.ProtocolCommandListener)
  • class edu.iastate.anthill.indus.query.QueryBuilder
  • class edu.iastate.anthill.indus.query.QueryOptimizer
  • class edu.iastate.anthill.indus.query.QueryPlanner
  • class edu.iastate.anthill.indus.query.QueryRewriter
    • class edu.iastate.anthill.indus.query.QueryTranslator
  • class edu.iastate.anthill.indus.query.QuerySampleBuilder
    • class edu.iastate.anthill.indus.query.QueryPlannerTest
    • class edu.iastate.anthill.indus.query.QueryTranslatorTest
  • class edu.iastate.anthill.indus.reasoner.ReasonerPanel.MyListSelectionListener (implements javax.swing.event.ListSelectionListener)
  • class edu.iastate.anthill.indus.query.RegisterARFF
  • class edu.iastate.anthill.indus.datasource.schema.Schema (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.anthill.indus.panel.SchemaPanel.MySchemaListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.panel.SchemaPanel.MyTypeListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.panel.SchemaPanelGUI.MyTableModelListener (implements javax.swing.event.TableModelListener)
  • class edu.iastate.anthill.indus.reasoner.ShortBridgeReasoner
    • class edu.iastate.anthill.indus.reasoner.MappingReasoner
  • class edu.iastate.anthill.indus.reasoner.ShortBridgeReasonerTest
  • class edu.iastate.anthill.indus.reasoner.ShortBridgeRule
  • class edu.iastate.utils.string.SimpleXMLParserTest
  • class edu.iastate.anthill.shared.Sorter (implements java.util.Comparator)
  • class edu.iastate.utils.string.StringUtils
  • class edu.iastate.utils.string.TaggedText (implements java.lang.CharSequence)
  • class edu.iastate.utils.TaskEngine
  • class edu.iastate.utils.TaskEngine.PriorityQueue
  • class java.lang.Thread (implements java.lang.Runnable)
    • class edu.iastate.utils.Console.ReaderThread
    • class edu.iastate.anthill.indus.agent.IndusHttpServer (implements edu.iastate.anthill.indus.agent.IndusCommand)
    • class edu.iastate.utils.TaskEngine.TaskEngineWorker
  • class edu.iastate.utils.lang.ThreadWorker
  • class edu.iastate.utils.lang.ThreadWorker.ThreadVar
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class edu.iastate.anthill.indus.iterator.pdb.PDBException
  • class java.util.TimerTask (implements java.lang.Runnable)
    • class edu.iastate.utils.TaskEngine.ScheduledTask
  • class edu.iastate.anthill.shared.Triple
  • class edu.iastate.utils.io.URLUtils
  • class edu.iastate.utils.Utility
  • class edu.iastate.utils.string.Validator
  • class edu.iastate.anthill.indus.datasource.view.View (implements edu.iastate.anthill.indus.datasource.Configable)
  • class edu.iastate.anthill.indus.panel.ViewPanel.MyViewListener (implements java.awt.event.ItemListener)
  • class edu.iastate.anthill.indus.panel.query.WhereAtomPane.FieldListener (implements java.awt.event.ItemListener)
  • class org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
    • class edu.iastate.utils.log.XMLFilterBase
      • class edu.iastate.utils.log.DataUnformatFilter
  • class edu.iastate.utils.log.XMLProperties
  • class Zql.ZConstant (implements Zql.ZExp)
    • class edu.iastate.anthill.indus.query.ZConstantEx

Interface Hierarchy

• interface edu.iastate.anthill.indus.datasource.Configable
• interface edu.iastate.anthill.indus.panel.query.IColumn
• interface edu.iastate.anthill.indus.agent.IndusCommand
• interface edu.iastate.anthill.indus.panel.query.ISQLBuilder
• interface edu.iastate.anthill.indus.iterator.mapping.MappingDB
• interface edu.iastate.utils.lang.MessageHandler